rs3656755 SNP Detail

Summary

• ID
  rs3656755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtggttgct ggcaacaaag atgacgtggc
  tctgttcttg ggacacacat ggtggaagga gagaactgac tcccggaagA CCTCCATGCA
  CTGGATCAGG TAAGCAGgtg tgcgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
  Y
  GCCCTCCCTC TAAAATGCAA TAATAAAAGG ATTATCATAG GCACTGAATC CTCAGCACTT
  GTGGAATAAG GGTGGGTGAG TCACATGACC TCACGTAGCG GGCTGGGTGT CACTGTTCTT
  TCTTGACCTT CAGCCCCATA CCTCATCCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5032658	WI_WGS_4_127611555	WI	MOUSE	f	SNP	T			C
ss45624840	mCV22590581	ABI	CRAMUS_MOUSE	f	SNP		T	C		C
ss321317068	CHEV_4_129780023	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3656755					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996572 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1071 bp distal
Rr600439	regulatory region 600439	211 bp distal
Rr600440	regulatory region 600440	within coordinates
Rr600441	regulatory region 600441	1041 bp proximal
Rr600442	regulatory region 600442	1723 bp proximal