rs3656694 SNP Detail

Summary

• ID
  rs3656694
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119979766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGGAAAA AAAACTTGTC TAAATAAAAT ACGCCGGGCA
  TGGTGATGCG CACCTTTAAT CCCAGCACTT CTGAGGCAGA GGCAGGCAGA TTTCTGGGTT
  S
  GAGGCCAGTC TGGTCTACAA AGTAAGTTCC AGGACAGCCA GGGCTATACA GAGAAAACCT
  GTCTTGAAAA ACCTAAATAA ATAAATCAAT AGAAATGTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5032596	WI_WGS_6_120799122	WI	MOUSE	f	SNP	G			C
ss45871676	mCV22584059	ABI	CRAMUS_MOUSE	f	SNP		G	C	C	G
ss133594477	ENSMUSSNP1352505	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3656694					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119979766 () rs orientation: forward

Symbol	Name	Function Class
Rr380001	regulatory region 380001	within coordinates
Rr637751	regulatory region 637751	664 bp distal
Rr637752	regulatory region 637752	867 bp distal
Tssr62747	transcription start site region 62747	554 bp upstream
Tssr62748	transcription start site region 62748	481 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	Intron