rs36565786 SNP Detail

Summary

• ID
  rs36565786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85274522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACAGCTT CAGCGAGAGG
  CCCTTTCTCA AAAAATAAAT GTGGTGAGCA GTTGAGGAAA GACACCATCT GTCTTCCACA
  CACTACTACT GCACACATAT ATGTACCTGC ACACACACAC ACACACACAC ACACACACTA
  ACAAGTGCAT ACAATGGACA CATAATCACA CAGAATACAT CTAATATCTT AAGTTTAGGA
  R
  TTGCAGAACC TTAAAAAAAA AAAAACAGTA TAGCTGAATA TGATGGCTCA CTCTTCCAAT
  CCCAGAGGCA GGAGGATTAC CTTGAGTTCA AGGCTAGCCA GCTCCATAGT AAGACCCTGT
  CTCAATAGCA AAAAAAAACA AAAAAACAAA AAAACAACAA TAACATATAA AAATGTTTGC
  CAGGACTGCT AAGAAGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51356109	NES13743865	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36565786					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51356109	NES13743865	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85274522 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr633169	regulatory region 633169			1146 bp distal
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant
Tssr57413	transcription start site region 57413			950 bp upstream