rs36564132 SNP Detail

Summary

• ID
  rs36564132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:99064457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGTATG GGTAACACTG
  TAAGGGGCTG AGAAGGCAGA TGAGTGACTG TGCACTTACT CAAAAAGGCT GTGAGTTCTA
  CTCCTGGCAC CACAGGCACA AACAAGACAG GCTCTGGAAA TGAAGAGGGA AGGACTGGGA
  GGCTCCACTC AGGGAGCGTT GCTGAAATGC AACAGCTCCT GACAGGGGCC AGCCGCCATG
  R
  CCACTCTGCT GTTCCTTTCT CCCGCTGTTT TATCTACTGT TCTCTGCCAC TGTCGGGAGG
  TGGGGAAAGT TTTATAATTC TTGATTCAAA GTGGAAAAAC AAAGAAATGT GACTTGCTCA
  AGGTCGCAAA TGTGCTGAGT GGCAGGGCAG AAAAACAAAA ACAAACAAAC CTTGTTTCCA
  GAGAACCAGA TAGTCACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss51783691	NES14788807	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs36564132					SNP	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51783691	NES14788807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99064457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635345	regulatory region 635345			165 bp proximal
Tssr62271	transcription start site region 62271			1 bp downstream