rs3656250 SNP Detail

Summary

• ID
  rs3656250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123030469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGATTTTGC TGGTATTGTC TGAGAATGCA TGCATACCAT
  GTGTTTAGAT CCAATCCATG TCCTGGCCCC TTTCCACCCC ATCCTTCCCC TCTTCCCACT
  R
  CTACAACTCC CTTCCAGTTT CATGTGCTCA TTTGTTAGAC GACGGAGTCC TCTTGGTGTC
  ACCAATCTAT GTGGGTGAAG GATAATCTAG TGGTAGCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5032152	WI_WGS_3_123630564	WI	MOUSE	f	SNP		A	G
ss135760920	ENSMUSSNP2577822	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss320918247	CHEV_3_122939738	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3656250					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123030469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	468 bp distal
Rr584473	regulatory region 584473	1949 bp distal
Rr584475	regulatory region 584475	394 bp distal
Rr584476	regulatory region 584476	100 bp proximal
Synpo2	synaptopodin 2	671 bp upstream
Tssr35497	transcription start site region 35497	698 bp upstream
Tssr35498	transcription start site region 35498	663 bp upstream