rs3656144 SNP Detail

Summary

• ID
  rs3656144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138465621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC AAGACTTGCA TGCCGGGCCT
  Y
  CCCAGTGCTC TGCACCTTCT TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5032046	WI_WGS_4_136350718	WI	MOUSE	f	SNP		T	C
ss147655669	ENSMUSSNP7238999	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
ss321376638	CHEV_4_138294225	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3656144					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138465621 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	within coordinates
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603006	regulatory region 603006	1154 bp distal
Rr603007	regulatory region 603007	753 bp distal
Rr603008	regulatory region 603008	779 bp proximal
Ubxn10	UBX domain protein 10	mRNA-UTR