rs36561266 SNP Detail

Summary

• ID
  rs36561266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120897348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG ATAAATAGTC CAAGAACTGC
  Y
  CTATCACCCC AGTAATCAAA TATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51606455	NES14664199	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	C	T	T		C		T	C		C
ss60441588	NES15944806	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	C	T	T		C	T	T	C		C
ss135713488	ENSMUSSNP3167171	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320902598	CHEV_3_120806617	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36561266					SNP	T	T	C	T	C	C	C	C	C	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51606455	NES14664199	PERLEGEN	MM_PANEL	f	SNP	C/T
ss60441588	NES15944806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120897348 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	within coordinates
Rr397968	regulatory region 397968	1143 bp upstream
Rr584003	regulatory region 584003	1227 bp distal
Rr584004	regulatory region 584004	817 bp proximal
Rr584005	regulatory region 584005	1308 bp proximal