rs3656035 SNP Detail

Summary

• ID
  rs3656035
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCTGCC CCTCCAAAAT
  AAACACACCT GCCTCCCTGC CATTTGGCTT TGGTTGGTGT ATGGCTGCTT GAGAGAAGCC
  TTGGGTGCAC CCTTCTGACC CCTGAATAAT GCAGACCTCC GACTGTGAGT TCTATTAAGC
  CTTTCACTGG AATAAAAGAA TGCCAAGAAT TTTCACGGGG TGGGTGAGAT TGGTGAGCTC
  M
  GTGGTTGCTG GCAACAAAGA TGACGTGGCT CTGTTCTTGG GACACACATG GTGGAAGGAG
  AGAACTGACT CCCGGAAGAC CTCCATGCAC TGGATCAGGT AAGCAGGTGT GCGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC GCCCTCCCTC TAAAATGCAA TAATAAAAGG
  ATTATCATAG GCACTGAATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5031937	WI_WGS_4_127611405	WI	MOUSE	f	SNP	C			A
ss45713097	mCV22590582	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3656035					SNP	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996422 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	921 bp distal
Rr600439	regulatory region 600439	61 bp distal
Rr600440	regulatory region 600440	within coordinates
Rr600441	regulatory region 600441	1191 bp proximal
Rr600442	regulatory region 600442	1873 bp proximal