rs36557954 SNP Detail

Summary

• ID
  rs36557954
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32035235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCATCTA GAATGCTGTG
  GTAGGGTTAA GAAGGAAAAT GGATTCTAAT CGTCAGCCCC ATGCCTGATT CCAGTTAATG
  CTCAATGTAT GGTAGATATT GTTATGTTGA TGATACATGT GGTAAACTGT TATGGCCCCT
  TCCTTTCAAT CACAAGTATT GTCTGCCACC TATCCCAATA TATCGCTGTG CCCTTTTATG
  M
  GGGACTAGAA AAAAAATGTC ATTTAATTAT CTTCCTCCTC TATGAATTCC AAATTCTGTT
  TTTTAAAAAA AGGCAAGAAG TCAAACAGAG GATTTTAAAA TTAGCTTCAT GGTTGGCAAA
  TTAGAAGAAT TAGAAGAAGA AGATTACACT CAAAGATCTT CTCTTTAAAT CTTCTCCTCT
  AGTTCAAGAT CTGGAGTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51586551	NES14850092	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36557954					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586551	NES14850092	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32035235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700012A03Rik	RIKEN cDNA 1700012A03 gene			Intron
				Noncoding-Transcript-Variant
Gm67015	predicted gene, 67015			229 bp upstream
Rr628076	regulatory region 628076			1293 bp distal