rs3655605 SNP Detail

Summary

• ID
  rs3655605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123030353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGTTTTC TGAAATTGTG CTTTTCTGAA CTAACATATG
  TTTAGAGGAG GAGAAGGAGG GCCTTCCACA GTAAACTATC TCCTAATAAC TTTCTATCGC
  R
  AGGTTTAAGA TGTTTTCGAT TTTGCTGGTA TTGTCTGAGA ATGCATGCAT ACCATGTGTT
  TAGATCCAAT CCATGTCCTG GCCCCTTTCC ACCCCATCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss5031507	WI_WGS_3_123630448	WI	MOUSE	f	SNP						G	A
ss51024614	NES13910056	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A				A	A		A	A		A
ss135760914	ENSMUSSNP4402206	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320918245	CHEV_3_122939622	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3655605					SNP	A	G	A	G	A	G	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024614	NES13910056	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123030353 () rs orientation: forward

Symbol	Name	Function Class
Rr584473	regulatory region 584473	1833 bp distal
Rr584475	regulatory region 584475	278 bp distal
Rr584476	regulatory region 584476	216 bp proximal
Synpo2	synaptopodin 2	555 bp upstream
Tssr35497	transcription start site region 35497	582 bp upstream
Tssr35498	transcription start site region 35498	547 bp upstream