rs3655568 SNP Detail

Summary

• ID
  rs3655568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123030334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACAAGAG CATTTTTGAA AATGTTTTCT GAAATTGTGC
  TTTTCTGAAC TAACATATGT TTAGAGGAGG AGAAGGAGGG CCTTCCACAG TAAACTATCT
  Y
  CTAATAACTT TCTATCGCAA GGTTTAAGAT GTTTTCGATT TTGCTGGTAT TGTCTGAGAA
  TGCATGCATA CCATGTGTTT AGATCCAATC CATGTCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss5031469	WI_WGS_3_123630429	WI	MOUSE	f	SNP						T	C
ss51024616	NES13910054	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C				C	C	C	C	C
ss135760911	ENSMUSSNP5604550	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs3655568					SNP	C	T	C	T	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024616	NES13910054	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123030334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	333 bp distal
Rr584473	regulatory region 584473	1814 bp distal
Rr584474	regulatory region 584474	1986 bp distal
Rr584475	regulatory region 584475	259 bp distal
Rr584476	regulatory region 584476	235 bp proximal
Synpo2	synaptopodin 2	536 bp upstream
Tssr35497	transcription start site region 35497	563 bp upstream
Tssr35498	transcription start site region 35498	528 bp upstream