rs3655072 SNP Detail

Summary

• ID
  rs3655072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123030293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTGCCCGA AGAAAGCAAC CCTTTAAGGG GTGGGGGGAA
  TAAAACAAGA GCATTTTTGA AAATGTTTTC TGAAATTGTG CTTTTCTGAA CTAACATATG
  Y
  TTAGAGGAGG AGAAGGAGGG CCTTCCACAG TAAACTATCT CCTAATAACT TTCTATCGCA
  AGGTTTAAGA TGTTTTCGAT TTTGCTGGTA TTGTCTGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5030971	WI_WGS_3_123630388	WI	MOUSE	f	SNP							C	T
ss51024618	NES13910052	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	T			C	T	T		T	C		T
ss135760905	ENSMUSSNP7227265	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320918243	CHEV_3_122939562	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3655072					SNP	T	T	C	T	C	T	C	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024618	NES13910052	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123030293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	292 bp distal
Rr584473	regulatory region 584473	1773 bp distal
Rr584474	regulatory region 584474	1945 bp distal
Rr584475	regulatory region 584475	218 bp distal
Rr584476	regulatory region 584476	276 bp proximal
Synpo2	synaptopodin 2	495 bp upstream
Tssr35497	transcription start site region 35497	522 bp upstream
Tssr35498	transcription start site region 35498	487 bp upstream