rs3655053 SNP Detail

Summary

• ID
  rs3655053
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123030284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCTACCT GCTGCCCGAA GAAAGCAACC CTTTAAGGGG
  TGGGGGGAAT AAAACAAGAG CATTTTTGAA AATGTTTTCT GAAATTGTGC TTTTCTGAAC
  W
  AACATATGTT TAGAGGAGGA GAAGGAGGGC CTTCCACAGT AAACTATCTC CTAATAACTT
  TCTATCGCAA GGTTTAAGAT GTTTTCGATT TTGCTGGTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5030952	WI_WGS_3_123630379	WI	MOUSE	f	SNP			A	T
ss135760902	ENSMUSSNP2038988	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A			A
ss320918242	CHEV_3_122939553	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3655053					SNP	T	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123030284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	283 bp distal
Rr584473	regulatory region 584473	1764 bp distal
Rr584474	regulatory region 584474	1936 bp distal
Rr584475	regulatory region 584475	209 bp distal
Rr584476	regulatory region 584476	285 bp proximal
Synpo2	synaptopodin 2	486 bp upstream
Tssr35497	transcription start site region 35497	513 bp upstream
Tssr35498	transcription start site region 35498	478 bp upstream