rs36548963 SNP Detail

Summary

• ID
  rs36548963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83458071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGACAT CCAGCACCAG
  CACTGGCACG TGCTGCAGAG CTTCGAAGTG GAGCCTGGGG CAGCGAGAGG GAGCTCAGGC
  AACGCCACTC ACCTTCCTCA CACCCAGCCC GAGTCTCAAG ACTGAAGCTG CCTGCAGAGT
  GGAAGGCTGA GTAGACTGCT CACTAGTCTT AGACTGCTAC TGAAGTCAGC ATTTAAAGCA
  Y
  TGATGTGAGC AACCCAAGCC TGATGGAGGA CACTAAAAAT GTCAATCAAA ATGGACATTT
  TTCTAAACAA CTTCAGTCTT CCATCCTGAG CCAATTATGA CAAGCATTCA CCACAAGGCA
  CAATCGAGAG AAAAGAAAGG AAGGAAGGAA AGGAGGGAGA GATGCTGGGC ACGTCCCGCA
  TCCTTGCAGT TCCGCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354763	NES13746683	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	T	T	C	C	T	C
ss133347910	ENSMUSSNP1624220	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36548963					SNP	T	T	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354763	NES13746683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83458071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dguok	deoxyguanosine kinase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr632876	regulatory region 632876			1277 bp proximal
Rr632877	regulatory region 632877			1279 bp proximal