rs36548144 SNP Detail

Summary

• ID
  rs36548144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31067420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTAGTG TCACACACAT
  ACCAGGTTCA AATCTCAAGG GTGGTGCGTG TGGCTAGTCC CGTCCTCTCT GACTGCCGAC
  GGAACAGTCC TGGGAGGTCA GTCCTGAAGT ATTGGATAGG GGGGAAGGGA ACATAAAGCC
  AAACTAGAAG GCCATGAAGC AGAAGCTAAG GAGGGGCACA GGGGACACAT GCCAAGCAGA
  Y
  GGTGGCTTTG GAGGTCACTG CTGTCCTTGA GAGATGTGCT CACTTGGGTG GGTGCCCTAT
  GGCTGGACAC TCCAAATGTG ACTGGATCCC GAGGCTGCTT CACATCTTCC TGCCACTTGC
  ATTGTTGTGG ATACCATACA AGTGTACAGA GTCCACCCTC TTCAAACAAA ATAAAACCCT
  GACACAAAAG TGCTCCGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260341	NES13792645	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36548144					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260341	NES13792645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31067420 () rs orientation: forward

Symbol	Name	Function Class
Rr627878	regulatory region 627878	1524 bp distal
Rr627879	regulatory region 627879	393 bp proximal
Rr627880	regulatory region 627880	1936 bp proximal
Tssr60153	transcription start site region 60153	1933 bp upstream