rs36547732 SNP Detail

Summary

• ID
  rs36547732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18817645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACTTGG CTTTCCATAA
  CTCCTGCAAA AGTTTTGTTG TGTGTTATTC CCTCTTCTCT TGGTTGTTCA TTTTCATCAT
  TACACAGTAC TATTGTGCCC TGACTGCAAT TTTCCAAGTA AACATAATGA CAACCATGGA
  TAGTGATATA ATTAGCATCC TCACAATATC TTAACGATGT TAAGTATCAT TATTGACACA
  Y
  TTATGTTTGG GACATTTAAT ATATACTGAA TCTTTTCAAC AATTTCTCTT TTAAAAGTTT
  AATTTTCAAA TTTTTCTCTT TCCTATATGT GTGTGTCTGT ATATGCCATC TAAGTGCGGT
  GTCCTTTGAG GCCATAAGAA AGCATTGGAA TCCCTAGAGC TGGAGTTAAA GGAGGTTGAG
  AGTCACCCAG TGTGGGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51245909	NES13801997	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	C		T	T	T	T
ss133041713	ENSMUSSNP3192099	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36547732					SNP	C	C	T	T	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51245909	NES13801997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18817645 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	1780 bp proximal
Rr626952	regulatory region 626952	1906 bp proximal