rs3654703 SNP Detail

Summary

• ID
  rs3654703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95784366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGATTTC CCTGCTACAA
  TGTAAACTTC TGGAAGTAGG CCCTGTGTCT GTTCTCATCA TGGCTGTATG ACTCAGAGTA
  GGAACTGAGT AATATTGGTC ATGTGGACTA ATTAATGCCC AGGCATTCAC TGAACACACG
  GATAAACTGA GCTCTGTGCT TGGTACTGAG GTTCAATCAA AGCAGAAACA TGTCTGTAGT
  Y
  ACTACAGGGG CTTGTAGGCT ATATATCCCC TTAAAACAGA AATATCACAC TATGAATAAA
  AGTAGGGAGA CACTGAAAAA TTAAGGACTT AAAAACTAAC ACAATTGGCA GAGTGGTAAA
  ACATCTCAGG AAGGAGTCTT GTGTGAGCTA AGTTGTATAG AAGGAGCAGC GCTTAGGTCA
  GGTGAAAGGG ACTGACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5030602	WI_WGS_4_93628886	WI	MOUSE	f	SNP	C			T
ss45721002	mCV22849032	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147068260	ENSMUSSNP3037602	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321216038	CHEV_4_95562820	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3654703					SNP	C	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95784366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			590 bp distal
Rr595486	regulatory region 595486			259 bp proximal
Rr595487	regulatory region 595487			1179 bp proximal
Rr595488	regulatory region 595488			1202 bp proximal
Rr595489	regulatory region 595489			1335 bp proximal