rs36546520 SNP Detail

Summary

• ID
  rs36546520
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83575877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAAAATG TCTACATCTG
  ACTACATTGT AAAGAACACG CAGGCATCTG TGGCGGGGTG GGAGGAGGTC TGAACTTCTG
  TTTCTATTCT GAGGTTTTGG AGTGAAGCAG GAGGGAGCAT TATCAAGCAC ACAGGCACTA
  TTCGCCTTGA GCTATAGAGG GCGCAGTGGG GCCAAAGTCC GGCTGACAAA TGGAGTTCTT
  M
  GGCAGCCTTC ATTCAATGTC AACACAGTGA ATTTGTATAA TAGTTATGTA TATATGCATG
  CATTTGAGGG AAATGGAAAT GTTTTGTATA AAACGACTAT ATACATGTGT GAAAGTAAAT
  ACAATGGGCC GCTACACTGG GACACTAGGG ATGCTGGGGC AGAGAGTTCC TTGTTTTACT
  ATTGTTCTGA ATCTAGAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51353403	NES13744258	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36546520					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353403	NES13744258	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83575877 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	134 bp proximal
Gm7424	predicted gene 7424	1912 bp downstream
Rr632898	regulatory region 632898	492 bp distal
Rr632899	regulatory region 632899	within coordinates
Rr632900	regulatory region 632900	33 bp distal
Rr632901	regulatory region 632901	845 bp proximal