rs36546372 SNP Detail

Summary

• ID
  rs36546372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62376108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATAACA TGATTTACTT
  TCCTGGATAC ACTTTCCCAT ATTCTCCAAT GAAGATGGTT CTTAAAAAAT CAGAATAAAG
  ATGCTGTTTA ACATATAGGA TTATTACAAA TATATAGATA TAAAACATAA TTATAGTTAC
  TGAAGAATAA ATATAAGATC AGTGTTGAAA ATGGAAGGAA ATATGCCACC ATTTACTTAG
  Y
  CTGGGTGCAG ATACCAAATA ATAATTTTAG AGTAGACTTT GTTTTACAAA TGCAGAAAAA
  TACACTTTGC AATTAATTGA CTTAAAATTA TTACAGCTCT TTTTCCAGGT CAATTAATTA
  GGAAGGTACC ATGTGCATGT ACCTAATGCT CTTGAAACAG CGGTAGATCT CATAAGTTTC
  TGTTACAGTG GTTTTTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51531098	NES14690712	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36546372					SNP	C	T	T	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51531098	NES14690712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62376108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dhx36	DEAH-box helicase 36			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr577527	regulatory region 577527			1692 bp proximal