rs36544638 SNP Detail

Summary

• ID
  rs36544638
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTCACGTT AGGACAGTGT GACTAATACC AGTGGATGAC
  TCTCCTGTGG AACAATCTGA TTAAACTGAA AACTTGCAGA TTATACATCC AGAGAAAAAA
  M
  CATAATAGAG TAAAGAATAA AGTGTAGAAA TACTTATAAG CAATTTCCTT TTTCTTTTTT
  TATTTATTTG TTTTTAGATT TTAGAAGTAA ATCAGACTGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990092	NES13925791	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36544638					SNP	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990092	NES13925791	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937358 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1647 bp upstream
Tssr29661	transcription start site region 29661	1503 bp downstream
Tssr29662	transcription start site region 29662	1454 bp downstream
Tssr29663	transcription start site region 29663	1437 bp downstream
Tssr29664	transcription start site region 29664	954 bp downstream
Tssr29665	transcription start site region 29665	915 bp downstream
Tssr29666	transcription start site region 29666	879 bp downstream
Tssr29667	transcription start site region 29667	836 bp downstream
Tssr29668	transcription start site region 29668	147 bp upstream
Tssr29669	transcription start site region 29669	191 bp upstream
Tssr29670	transcription start site region 29670	235 bp upstream
Tssr29671	transcription start site region 29671	779 bp upstream
Tssr29672	transcription start site region 29672	882 bp upstream
Tssr29673	transcription start site region 29673	910 bp upstream
Tssr29674	transcription start site region 29674	959 bp upstream
Tssr29675	transcription start site region 29675	969 bp upstream
Tssr29676	transcription start site region 29676	979 bp upstream
Tssr29677	transcription start site region 29677	996 bp upstream
Tssr29678	transcription start site region 29678	1075 bp upstream
Tssr29679	transcription start site region 29679	1119 bp upstream
Tssr29680	transcription start site region 29680	1142 bp upstream
Tssr29681	transcription start site region 29681	1244 bp upstream
Tssr29682	transcription start site region 29682	1267 bp upstream
Tssr29683	transcription start site region 29683	1310 bp upstream
Tssr29684	transcription start site region 29684	1335 bp upstream
Tssr29685	transcription start site region 29685	1376 bp upstream
Tssr29686	transcription start site region 29686	1442 bp upstream
Tssr29687	transcription start site region 29687	1540 bp upstream
Tssr29688	transcription start site region 29688	1564 bp upstream
Tssr29689	transcription start site region 29689	1590 bp upstream
Tssr29690	transcription start site region 29690	1620 bp upstream
Tssr29691	transcription start site region 29691	1666 bp upstream
Tssr29692	transcription start site region 29692	1682 bp upstream
Tssr29693	transcription start site region 29693	1713 bp upstream
Tssr29694	transcription start site region 29694	1746 bp upstream
Tssr29695	transcription start site region 29695	1772 bp upstream
Tssr29696	transcription start site region 29696	1785 bp upstream
Tssr29697	transcription start site region 29697	1809 bp upstream
Tssr29698	transcription start site region 29698	1946 bp upstream
Tssr33800	transcription start site region 33800	1051 bp downstream
Tssr33801	transcription start site region 33801	1396 bp downstream
Tssr33802	transcription start site region 33802	1532 bp downstream