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rs36543910 SNP Detail
Summary
  • ID
    rs36543910
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:85987955 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCAAGCGTTG CCCCAGTCAT
    TCCTGCCTGA GAAAGGTGAG CTCTCACCCG TCTCCACAGT CAACACTCAA CAAATGTATC
    TTACATGGGA GCCATCCTGG TGACCAACGC ATCACTACAG TGTGCCATGT TCTTACCACT
    GGCCCTGTGG ATAGCTCCAG TACATGAGTA CCGGAAGTCC ATCTGTAAGT GTCCTCTCTG
    Y
    GCATGCTCCC ATTCCAGCCC TGCCCTTGCC CAGAAACCCT CTTTTTTCCA CTTCTCCCAT
    TCTGTCCTTC CCTATCATGC TCTCCCCTGC TGCTGGCTGG TCTGGCCTAA GTGAGGACAG
    AGGCGATCTC TCTTCACATG AAAGCTGACC CAGGAGACAC ACCCCCCCCT CCCCTGCTGC
    CTCTCACCAC GCTGTTGGCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51757771 NES14802170 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C C C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36543910 SNP C C C C C C C C C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51757771 NES14802170 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:85987955 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930553P18Rik RIKEN cDNA 4930553P18 gene 1620 bp downstream
Gm66378 predicted gene, 66378 29 bp upstream
Rr633312 regulatory region 633312 709 bp distal
Rr633313 regulatory region 633313 812 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory