rs36542885 SNP Detail

Summary

• ID
  rs36542885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83695797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACCCGCA GCCACTTTTC
  CAAGCCTCTG AACCGTCATG CTTTAGTTCC ATGGAGACGG CAAGAATATG CCTGTGGGGG
  TGGGGGTTGA ATATGAACAA CCTGCTGTAA CACCTGGCAC ACCGCAAGCA TTCTGTGTTA
  GCTAAGGTTT TGGTTTTGGT TACTTCCATT CACAATTTCC AGGCCTTCAC ATCCTCTTTC
  Y
  CTCCAGCTAG AGCACTGTCC CTGATCGTGC CAGGGAGATC TCTGGAGATA GTCAACAGCG
  GCAGCATCAC CAGGAACCCT GTTACAAATA GAAATTCTCA TGTCCTGGCC AACATCTCCT
  GTACCAGAGC ACCTCAGGGA GGGTCCAGAA GTGGAGAGCT GTTGTAGCCT TTCTGATAGA
  GCCAAGCTCC CGGCATGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51559304	NES14677654	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36542885					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559304	NES14677654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83695797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13301	CpG island 13301	1027 bp proximal
Gm7115	predicted gene 7115	1235 bp upstream
Gm26771	predicted gene, 26771	within coordinates
Gm66689	predicted gene, 66689	784 bp upstream
Rr578903	regulatory region 578903	919 bp proximal
Rr578904	regulatory region 578904	1439 bp proximal
Rr578905	regulatory region 578905	1742 bp proximal
Rr578906	regulatory region 578906	1871 bp proximal
Tssr33830	transcription start site region 33830	1450 bp downstream
Tssr33831	transcription start site region 33831	1483 bp downstream