rs3654195 SNP Detail

Summary

• ID
  rs3654195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119371981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT GCTGGGATCC ATGCTTTTGT
  R
  TTCCAGAAGC AGCCTTCAAA GAGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5030090	WI_WGS_2_120486030	WI	MOUSE	f	SNP	A				G
ss37650078	NES09017059	PERLEGEN	MM_PANEL2	f	SNP	A			A		A	A		G	A	G		A
ss45382052	mCV24933178	ABI	CRAMUS_MOUSE	f	SNP		A	A		G		A
ss147335177	ENSMUSSNP6438977	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320475988	CHEV_2_119367236	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3654195					SNP	A	A	A	A	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650078	NES09017059	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119371981 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	mRNA-UTR
Rr563526	regulatory region 563526	703 bp proximal
Rr563527	regulatory region 563527	794 bp proximal