rs36540750 SNP Detail

Summary

• ID
  rs36540750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31092349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTGGAAT TGTTTATTTT TTTAAAAAAC AAAACAAAAC
  AAAAAAACAA GCCAGATTAA AGCAGAACAC AGAACTGGAA GCTTAATTAT CAAGGAGATC
  R
  TTTCTTTGAA GATAATAACC GTTGGAGGTT TGTGCAAGGC TACTTTTCAG TATTATTTGA
  AGACCATAGA ATACAGAACG TCATCAAATG AAACACAAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260135	NES13793997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36540750					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260135	NES13793997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31092349 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	989 bp downstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627887	regulatory region 627887	1669 bp distal
Rr627888	regulatory region 627888	1272 bp distal
Rr627889	regulatory region 627889	139 bp distal
Rr627890	regulatory region 627890	999 bp proximal
Tssr55448	transcription start site region 55448	1634 bp downstream
Tssr60154	transcription start site region 60154	1932 bp upstream
Tssr60155	transcription start site region 60155	594 bp upstream
Tssr60156	transcription start site region 60156	363 bp upstream
Tssr60157	transcription start site region 60157	310 bp upstream