rs3654024 SNP Detail

Summary

• ID
  rs3654024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52787586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGAGCAT ACTGAGCATG
  CGCTAGGCTA TTTTGACAAG TCACTCATTT CTCCCTGAAT TATAGCTGAC TCTGGAAACA
  TGCTCAGTCG TGGATATGAA CAGAAAAGAA CAGACTCCTT CGGGTAATTT TTAAAAACAT
  TTCAATAAGC CCCCCTCATC AAATGGGTTT TTAGAAAGTC GTGTCTCTTG AGTCTGCCTC
  Y
  TCCAAGAGGG GCTACAAGTT TTTCCATGAT AAACATGCCC CGCTCAGGGC AGAGACCTAG
  AGGAACTTGC CTCTCTTGTG ATCCTGGGAA TTTTATTTAT TCATTACTAA TTTACATCAA
  TGGGAGGGGA GGCCTGTGGA GTTTGATGCC CCAGTGTAGG GGGATGCTGG AGGGGTGGAG
  AGGGTACATG GGTGGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5029916	WI_WGS_3_53333857	WI	MOUSE	f	SNP	C	T
ss320765672	CHEV_3_52684087	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3654024					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52787586 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	1347 bp distal
Rr576596	regulatory region 576596	139 bp distal
Rr576597	regulatory region 576597	1910 bp proximal