rs3654005 SNP Detail

Summary

• ID
  rs3654005
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52787577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCCTCC ACTGAGCATA
  CTGAGCATGC GCTAGGCTAT TTTGACAAGT CACTCATTTC TCCCTGAATT ATAGCTGACT
  CTGGAAACAT GCTCAGTCGT GGATATGAAC AGAAAAGAAC AGACTCCTTC GGGTAATTTT
  TAAAAACATT TCAATAAGCC CCCCTCATCA AATGGGTTTT TAGAAAGTCG TGTCTCTTGA
  S
  TCTGCCTCTT CCAAGAGGGG CTACAAGTTT TTCCATGATA AACATGCCCC GCTCAGGGCA
  GAGACCTAGA GGAACTTGCC TCTCTTGTGA TCCTGGGAAT TTTATTTATT CATTACTAAT
  TTACATCAAT GGGAGGGGAG GCCTGTGGAG TTTGATGCCC CAGTGTAGGG GGATGCTGGA
  GGGGTGGAGA GGGTACATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss5029896	WI_WGS_3_53333848	WI	MOUSE	f	SNP	C				G
ss46933367	NES10825732	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C		G	C		G	C		C
ss320765671	CHEV_3_52684078	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs3654005					SNP	C	G	C	C	G	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46933367	NES10825732	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52787577 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	1338 bp distal
Rr576596	regulatory region 576596	130 bp distal
Rr576597	regulatory region 576597	1919 bp proximal