rs36539146 SNP Detail

Summary

• ID
  rs36539146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86760777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCACATG GTGGCTCACA
  ACCATCCGTA ACGAGATCTG ACTCCCTCTT CTGGAGTGTC TGAAGACAGC TACAATGTAC
  TTACATATAA TAAATAAATA AATCTTTAAA AAAAAAAAAA AAAAAAGAAA GAAATGGCAG
  GTAGCGGAAG CTTCGGTGCT ACCACTGTAA GGAGAAAGAG ATGGAGTCCA TCAGTTCACT
  Y
  GGGCAAATGA AGTTCTAAAA GCCAGAGGCC GTTTAGTTCA AATCACATTC TCCTGGAGAG
  GATGAACCAG TTTTTTTTTT TTTTTTTAAA GATTTATTTA TTTATTATAT GTAAGTACAT
  TGTAGCTGTC TTCAGACACT CCAGAAGAGG GAGTCAGATC TCATTACGGA TGGTTGTGAG
  CCACCATGTG GTTGCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51749638	NES14800063	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36539146					SNP	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749638	NES14800063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86760777 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633511	regulatory region 633511	1066 bp distal
Rr633512	regulatory region 633512	991 bp proximal
Tssr57506	transcription start site region 57506	1267 bp upstream
Tssr57507	transcription start site region 57507	1692 bp upstream
Tssr61859	transcription start site region 61859	258 bp upstream
Tssr61860	transcription start site region 61860	1724 bp downstream
Tssr61861	transcription start site region 61861	1752 bp downstream