rs3653898 SNP Detail

Summary

• ID
  rs3653898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95784192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGCAGT TCTAGAACAT
  TTTGCAGACC AGGCTGGCTT CAAAATCAGA GATCTGCCTG CCTCTGCCTG GAAAGTGCTG
  GGATTAAAGG TGTGCGCCAT CACATCCGGC TACTGAATTT CTTTACTGTT GCCCTAGCCC
  CCCTTATTTG AAGGTATACA TTTCCTAGTG GGTTTCCGGA TTTCCCTGCT ACAATGTAAA
  Y
  TTCTGGAAGT AGGCCCTGTG TCTGTTCTCA TCATGGCTGT ATGACTCAGA GTAGGAACTG
  AGTAATATTG GTCATGTGGA CTAATTAATG CCCAGGCATT CACTGAACAC ACGGATAAAC
  TGAGCTCTGT GCTTGGTACT GAGGTTCAAT CAAAGCAGAA ACATGTCTGT AGTTACTACA
  GGGGCTTGTA GGCTATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5029787	WI_WGS_4_93628712	WI	MOUSE	f	SNP	T			C
ss45708359	mCV22849022	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss147068255	ENSMUSSNP1359439	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321216037	CHEV_4_95562646	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3653898					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95784192 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			416 bp distal
Rr595486	regulatory region 595486			433 bp proximal
Rr595487	regulatory region 595487			1353 bp proximal
Rr595488	regulatory region 595488			1376 bp proximal
Rr595489	regulatory region 595489			1509 bp proximal