rs36534524 SNP Detail

Summary

• ID
  rs36534524
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31107529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAATAG AATTAAAATG
  CAGAGCGAAT ACGTGAGTCT ATTTCACATG TATGGAATCA GAAAGACTAT GGCTTGAAAG
  GTCATCAAGA AGAGAGGGGA GCAATGATCA AATCCTCCCA TGTTAAGTAA GAAGGTGCTG
  GGAGTACAAG ACTCTTGTGA AAGGCTGGCC AAAGGCAGGT GGTGTGTGAG TTGGCCATGT
  K
  TGACCAAATG TGTGCAAACC AAAAGTCTAC AACCTTGGAA GGCTTTTGTG TGTTGGTCCT
  GCTAAGAAGC AGTTTGCCAG GGAAGTGGCT ATTCAGTCTG GCTGGTGACT CAGGTGGTTA
  GAACACAGGG GCAGGGATCA GAATGGTGTC ATGGTGTGTG GTCAGCCTGT GGTGTCTGAG
  CATGAACAGC TGTGAACTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259891	NES13793780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36534524					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259891	NES13793780	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31107529 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627899	regulatory region 627899	946 bp distal
Tssr60163	transcription start site region 60163	1102 bp downstream
Tssr60164	transcription start site region 60164	1123 bp downstream
Tssr60165	transcription start site region 60165	1230 bp downstream