rs36530876 SNP Detail

Summary

• ID
  rs36530876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143417726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTTCCTC TGTCCCTAGC
  CTCACTGTGA CAGACCCATT GTCCAGACCT CGTAGCAATT CAATCACCTG CTTGGGTCCC
  CAGAGTCGCA AGAGAATTTA TAGAGCTCTT TTTGCCACTT CTCCCTCTCT GCCTTAGGAT
  GTAGCTGCCC TTTCTCCACT CAAATCTTAC CTCTGAGTTG GTGTGAGTCA CAGGAGAAGA
  Y
  TCTTTCTGGC CCTGTCTTTG CTTCAATGCA GGTGAATGGT TTCTAAACAT CACCCAACTG
  GCATGGTGTG GCATCGCCAT GCTGGCTTGT CAGAGCACTG TCACCTTCCT GAGAGTCGGC
  ATGCATCATC TGGGACTGAA AGTTATAGTC TTCTCAACCC AAACACCTTC TTCTCTCCTG
  AGTTTTCCTA AGGGAAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51661988	NES14646304	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36530876					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661988	NES14646304	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143417726 () rs orientation: forward

Symbol	Name	Function Class
Gm6260	predicted gene 6260	within coordinates
Rr586554	regulatory region 586554	1203 bp proximal