rs36526394 SNP Detail

Summary

• ID
  rs36526394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57514710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTGGCTA TGTCTCTCTT
  CATAGCCAGG CTCTCCGCTT CTTTCTCATG AGAGGTAAGT GTGAAGACAC TGAACTCATA
  TTCACTATGC AGTACTGCCC AGAGCCTTTC TCTCTAGAGC ATCTTTGATG TCTTTCCTAC
  ACGCACTGCA GAAACAGCAC CACCTAATTC TGAAGCATTT ACACACCCAG GCCTTTTCTT
  Y
  TATAGACTTT CTGGTGAGAT TTGTTGCCTG TTCTGTTTTT AGGACTGATG ATGATTTTGT
  GCTATGTGAA GAGGTATAAA TGTGGCCTTT GTCAGTCTGT GATCTCAGCA GATCTCTTTC
  TCTTGCAGAT TGCTTTGGTA TTTTTCAACA AGAAAAGGAG AGGGAGCGAG TTCCTGTGGT
  CCAGGGCACA TCCATCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ
ss51315093	NES13763433	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ
rs36526394					SNP	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315093	NES13763433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57514710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17484	CpG island 17484	1858 bp distal
Gm45193	predicted gene 45193	within coordinates
Rr631142	regulatory region 631142	1809 bp distal