rs36524820 SNP Detail

Summary

• ID
  rs36524820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82959520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATAGTT TTCAACCAGG
  TATATAGGAT ATACGTGGAT GTTCATAGCC ATGTGACAGA TGTAGGTGAT AGCTTGTAAC
  TTTTAGTTTT GTAATCTCTA GAGTTATAGC CATTTAAACA GCACTCTGAG TTGTCTAATG
  GCCCCAAGCA GACGATTCCA TCCAAGGAGA AGAAACATAC TGAAATACTT AAGTGCTTTT
  R
  CACTCCGCTG TCATTGGTGG AGAGCAAAGG GAGTGCTGTT TGCTAAGTCA ATAGTGCAGT
  GTTCCTCACA CTGGGTGATC TTCTTTTGTA AGTCAAGGGC AGTCAATCGG TGACAGAGAA
  AACAGATGAC CCATCTTGCC CAACTGCTTC CTGGCACCAA AGACAAAGGC GTGCGACACA
  CCCACCCCCA CCCCAAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50989864	NES13925204	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A	A	G	A	A	A	A
ss135410428	ENSMUSSNP3021100	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36524820					SNP	G	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50989864	NES13925204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82959520 () rs orientation: forward

Symbol	Name	Function Class
Rr375252	regulatory region 375252	1831 bp downstream
Rr578826	regulatory region 578826	1285 bp proximal
Rr578827	regulatory region 578827	1684 bp proximal