rs36524670 SNP Detail

Summary

• ID
  rs36524670
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:59676181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCCCTA TATAGCCTGG
  CTGTCCTGGA ACTCACTCTA TAGATCAGGC TGGCCTTGAA CTCAGAAATC TGCCTGCCTC
  TTTCCTCCTA AGTGCTGAGA TTAAAGGCGT GCACCACCAC TGCCCAGCAA TGTTAGAAGG
  CTTTAAAACA CTGTATACAA TCATGTTTAA AACTAAAAGG GAACTCCCAA CAGATAGTCT
  K
  CGAGATCTCT ATGAGGAAAT GAAACTTAAG ATAATGCCAA TGAACATCAT AACACAAAAG
  GATGGCAGGA AACTCCCCAA GGGGATGTGA ATTCTGAAAT ACATGAAGAA GGTTGCATTG
  TGGATAAGAT GTAACAAGCA CACTAAACTG CTGGGATTGT GCTTAAGAGA ATTAATATTT
  TAAAATAAAT TTGAATATAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51516791	NES14634641	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G		G	G	G		G
ss324646616	CHEV_14_60057569	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36524670					SNP	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516791	NES14634641	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59676181 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6560	CpG island 6560			1840 bp proximal
Gm45935	predicted gene, 45935			Intron
Rr493048	regulatory region 493048			within coordinates
Rr493049	regulatory region 493049			1215 bp proximal
Setdb2	SET domain, bifurcated 2			Intron
				Noncoding-Transcript-Variant
Tssr125903	transcription start site region 125903			1840 bp upstream