rs36523396 SNP Detail

Summary

• ID
  rs36523396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85309192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTAAGTCT CTCCAGATTC CTCCATGCAG AGACATGTCT
  ATTTTTGAAA GAAAACAAGT CCTATTTTAA AAAACTCTAG GGACGTATTC TCAGAAAGCT
  Y
  AGTTCGACGA AGTTGGGGGG GGGGCTGAAT TCGGAACCAT TCTCACTTCT AAACCCAGCC
  ACATCCCACC TTTGTAGCAT TTTCTTTCTT CCTTCAAAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51355971	NES13743485	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36523396					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355971	NES13743485	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85309192 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17641	CpG island 17641			157 bp proximal
Rr399729	regulatory region 399729			744 bp upstream
Rr399730	regulatory region 399730			1207 bp upstream
Rr633174	regulatory region 633174			406 bp distal
Rr633175	regulatory region 633175			530 bp proximal
Rr633176	regulatory region 633176			1199 bp proximal
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant
Tssr57414	transcription start site region 57414			354 bp upstream
Tssr61744	transcription start site region 61744			1202 bp downstream
Tssr61745	transcription start site region 61745			1268 bp downstream