rs36523149 SNP Detail

Summary

• ID
  rs36523149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89013187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCACCC TCCTTAGTCC
  TTGCTGAGAA TTTAGGATTT AAAGCCCAGA AGTCTCCACA ACCCCCACCA AGCAGGAGAG
  GCAGCGAGGT GACCACACAC AGGAGTACAG GCGCCCTGCT GCTTTCAAGT GAGAAGGGAT
  AGGCACGGAG GCTTCTCTAG GCTACTGCAA GCCCTGGACA TTCTCCAGTA GCTTCAAAGA
  R
  ACGGTCTTGG TCTCCTCTGC TCAAGCTGAG TTCATCATCA TGGGCACAGA CAGAAATGAC
  ACTGGTGTAG AGCCCGTGCT GCCCTACCCA CCTGCACCCC AGTCTCTGCT ATCCGAGTCA
  GCAAATCCTA TGAATAGAAC GAACCAGGCT ATGCACTTCT GGGATTGTGG GGGTCGAACA
  GAAGGGAGAG TTCTAGGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51760864	NES14794804	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36523149					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760864	NES14794804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89013187 () rs orientation: forward

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	within coordinates
Rr634070	regulatory region 634070	within coordinates