rs36515648 SNP Detail

Summary

• ID
  rs36515648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66656863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATAAAGA GAACCGGCTG
  GAGACAGTCC ACAAGAGGAT TAGAGCCAAA GATGCCCAGC CTTGGTTGTC TCACTCAGCT
  CCATGTTGTT CCAAATTCTG CCAAGGTGCA TTGAAAACTC TTCAAAAATA CACTCCTTCG
  AATTACTTAA TCACATGCTT CCCCCCAGAT CTCTTATTCA TGTATAGAGT GTTCATTCTC
  R
  ACAACAGTAA TTGAAAAATG TAAAATGTGA AAGGCACATT TTCACTATCC TTCCTGCCAT
  CTATTATGAT TTTGCTGTCT GGCTTGCAGC CCTGTAGCAG CCCACATGTA GGGGCCCCTC
  CTCCCACAAT TCCATCATTC CCTGGAGATG CTACGGAACC TTGGTGCGGA TGCAGCTTTC
  CTCCTTCCTG TGGAACCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50973450	NES13937971	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36515648					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50973450	NES13937971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66656863 () rs orientation: forward

Symbol	Name	Function Class
Gm65053	predicted gene, 65053	1917 bp upstream
Rr577865	regulatory region 577865	1928 bp distal
Rr577866	regulatory region 577866	1827 bp distal