rs36514197 SNP Detail

Summary

• ID
  rs36514197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:45385747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTATGTT GACTTTTTTC
  CACTAAAAAC CTTTAAGAGG AAGAAAAATT AGTATAAAAC TTGACCTCTT CTCTTTCTTT
  AATGAGAAGC TTGAAAATGA AGTTTCCACG TAGGGAGCAA ACCCATGTGG TACTCATAGA
  AGACCATCAG AGGATAATCA TGGCTTTGAG GGTTATAACT ACATAGCTAG AAAATCTTAC
  R
  TGTAAAATCC CTATTAATGT AATTTGATTA TTACTATGTC TCTGCTGGAA AGAGTTAATA
  TGTTTGAGGA CGAATCATAT TTTGAATTAA TGATCAGAAC TGCAAATGTA ATCAATGTAT
  TTTTTTTCAT AATAAAGCAA CCACAAAAAT CACACCAAAT ACCATTCATT TGCTTAAATG
  TCACTTTTAG AATAATTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51513070	NES14696147	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs36514197					SNP	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51513070	NES14696147	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45385747 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027H10Rik	RIKEN cDNA 1700027H10 gene			within coordinates
Pcdh10	protocadherin 10			Intron
				Noncoding-Transcript-Variant
Rr576058	regulatory region 576058			427 bp proximal
Tssr29010	transcription start site region 29010			1535 bp upstream