CTAGTATGTT GACTTTTTTC CACTAAAAAC CTTTAAGAGG AAGAAAAATT AGTATAAAAC TTGACCTCTT CTCTTTCTTT AATGAGAAGC TTGAAAATGA AGTTTCCACG TAGGGAGCAA ACCCATGTGG TACTCATAGA AGACCATCAG AGGATAATCA TGGCTTTGAG GGTTATAACT ACATAGCTAG AAAATCTTAC R TGTAAAATCC CTATTAATGT AATTTGATTA TTACTATGTC TCTGCTGGAA AGAGTTAATA TGTTTGAGGA CGAATCATAT TTTGAATTAA TGATCAGAAC TGCAAATGTA ATCAATGTAT TTTTTTTCAT AATAAAGCAA CCACAAAAAT CACACCAAAT ACCATTCATT TGCTTAAATG TCACTTTTAG AATAATTTTT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51513070 | NES14696147 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | G | A | A |
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
WSB/EiJ |
||||
rs36514197 | SNP | A | A | A | A | A | A | A | A | G | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51513070 | NES14696147 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:45385747 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
1700027H10Rik | RIKEN cDNA 1700027H10 gene | within coordinates | ||||||
Pcdh10 | protocadherin 10 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr576058 | regulatory region 576058 | 427 bp proximal | ||||||
Tssr29010 | transcription start site region 29010 | 1535 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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