rs36512165 SNP Detail

Summary

• ID
  rs36512165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123026498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTCCAGGG ATGAGTTAAG AATCTGCTTT CCTGAAGAGT
  ATCCTTTGAG TGTGTGTTAC AAAGGCTTGC TTTGCATTAC AGATGTAGAG AAAAATACCA
  R
  TTACTTGGAC TTTAAGTTTT TCAGTTTAAA TGTCAATGAA AACGTTCACT AAAATTCTTC
  TCTTTTTTAG GGTTCGTATA CTGTTCAGTA TACCAGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	LG/J	SM/J
ss51024676	NES13910140	PERLEGEN	MM_PANEL2	f	SNP	A	G
ss320918211	CHEV_3_122935767	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	LG/J	SM/J
rs36512165					SNP	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024676	NES13910140	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123026498 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			1199 bp proximal
Rr584474	regulatory region 584474			1829 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant