rs36510209 SNP Detail

Summary

• ID
  rs36510209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86993548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCCGAT TTTCAAGAAC
  CACGGAAAGG TGCTCCTTAA ATTTCAAAAG AAAGCATAGC CAAGGTTCTA GATTTCCATT
  CAGAACTATA AATTATTGCA GTTGTCAGAT ATGAGGTGAC ATTTAAAGTC AATGAAGACA
  GTTTCTAAGT TCCTGAGAGC TGGGTAATGT GCCAGGCCTC TTCTGAATGC ACTGCAGGGC
  Y
  GTCATTCACG CCGAAGCACT GGAGTCAGGG TCTGCAGGGA ACTGCTGCTC TCCTCCTGCT
  CCCCGCCTTC CCTCTCTGCC TCACTTCTTC CTTATCTCTC TGTTGTGTGC AGAAAGTGAT
  TGACTGCAGG CCTTGTGCAT GCTAAACACC TGTTCTGCCT CTGGGTTGCA CCCTAACACC
  AAATTAAATC CCTGTGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51746404	NES14795490	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36510209					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51746404	NES14795490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86993548 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfu1	NFU1 iron-sulfur cluster scaffold			Intron
				Noncoding-Transcript-Variant
Rr633575	regulatory region 633575			212 bp proximal
Rr633576	regulatory region 633576			246 bp proximal
Rr633577	regulatory region 633577			560 bp proximal