rs36506396 SNP Detail

Summary

• ID
  rs36506396
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:118418726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGTAAA CCATGCCTGC
  TATACATGTA GTCCTTTTGA GTGTTGGTGC TGATGATAAT TGACACTTGG GGTTGATATA
  GTAGGTAGAT TTCTGATGCT GTTAAAGTGG GGACACAGGT AGTTCCTTCA TGACAGCTGA
  CACGGAAAAC CAGAAAAAAG GGAAAAACAT GGAAGTAGGG CCGACAGAAG GAACTGAAAA
  K
  AGTGACTGAA TATAGACTGT TTCTTCTGTG AAGGAAGCCC CTGTAAAGAA GCCGTGCCCA
  ACATTGAACA CTCTGCAAGG CTGAATAACT TCTAGAATTC CATGATTGTG CAGAGTTTGG
  AATGTAGCAT GGCCGGAGCC TAATTACAAC TTATCTTGGG TTTTCTTTAG TTCCCTCAAT
  AGCCATTCTT TGTGAACTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51602828	NES14665043	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	G		T	T	G	T
ss135697819	ENSMUSSNP4696056	ENSEMBL	ENSEMBL_Sanger	f	SNP		T											G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36506396					SNP	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51602828	NES14665043	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118418726 () rs orientation: forward

Symbol	Name	Function Class
Dpyd	dihydropyrimidine dehydrogenase	Intron
Rr583911	regulatory region 583911	1121 bp proximal