rs36504740 SNP Detail

Summary

• ID
  rs36504740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69810865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATAAGTA AGCTTAGGGT
  GCCAACTTGC ACTGGCCAGA CCCTGGCACA ACGTGAGAGG CCACAAAAGG CACTACCAGG
  CCCAACAGGG ACTGCACGGG GTCAGAATCT ATACTTGCAT GAGGTCGGCA GGTGATTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTCCACTTTG AGGAGCAAAT CTGGAACTTA
  R
  GACAGCTATA AAGAACAAGG CAGGGTGACC CCAGGTTGAC AAATAAGAAG AGCGCCTTGG
  CAGGTGCACC ACCATTTTGG TCTCCACTTC CTTGCTACCC TTTCCTTCCC TTTCTCCCCG
  TCACTTCCGT TCCCTCCTCA CTTCCGTTTT CCTTTTGCCA CCTTTCTCTT CCTTCCTTCC
  TCTTCTGCTT ACTCCTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50977452	NES13926283	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36504740					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977452	NES13926283	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69810865 () rs orientation: forward

Symbol	Name	Function Class
D3Mit277	DNA segment, Chr 3, Massachusetts Institute of Technology 277	7 bp distal
Rr578240	regulatory region 578240	1161 bp distal
Rr578241	regulatory region 578241	130 bp distal