rs36503279 SNP Detail

Summary

• ID
  rs36503279
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108429212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCTGTTT GATCTCCCAG
  TAGTTTTCGG CCAGGATTCA GTTACAACTT CCATTCAGCC AGGGAATTGC TAGTCAATAA
  TATGTATAGA GCAGCCTAGC ACGGGTTGGA ATGGGACAGA GAAACAAGTT CTCATCTTTG
  GAGCTCATCC TCTCGGACAC CTTGCTGTGC ACCCTACCTG CCTTGACGGC ATGATGCCAG
  W
  GTTGGATGCT TTCCCCATAC AGCAGCAGGA CAGCCCTTCC ATAGCTACCA TGTCTTTCTT
  AGCATTATTG TCAGTGACAC TTCCTAAGAG AAGCCTGGTC ATCTTGTCCC CTGTCTTCAA
  AGTCTCCCTT AGAGAACAGA CTCGATTGAC ACTCTGGTGA TGTCTTTGGA TGCCCTGTAA
  AATGGGGCAC TGCCTAGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51814022	NES14768874	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36503279					SNP	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814022	NES14768874	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108429212 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636110	regulatory region 636110	1639 bp distal
Rr636111	regulatory region 636111	1392 bp proximal