rs36500893 SNP Detail

Summary

• ID
  rs36500893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22042236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC AAGAAATGAG AAAATTCACA
  Y
  GGTCCAAGTC GTCAGGCTCC TAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss51434026	NES14435453	PERLEGEN	MM_PANEL2	f	SNP	C		T	T
ss320683716	CHEV_3_21886994	CHEVERUD	SCREENING_POP	f	SNP		T			C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs36500893					SNP	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434026	NES14435453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22042236 () rs orientation: forward

Symbol	Name	Function Class
Rr367416	regulatory region 367416	35 bp downstream
Rr367417	regulatory region 367417	146 bp upstream
Rr574182	regulatory region 574182	670 bp distal
Rr574183	regulatory region 574183	within coordinates
Rr574184	regulatory region 574184	216 bp proximal
Tssr32754	transcription start site region 32754	235 bp upstream
Tssr32755	transcription start site region 32755	185 bp downstream
Tssr32756	transcription start site region 32756	220 bp downstream