rs36500314 SNP Detail

Summary

• ID
  rs36500314
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:18617226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTCTTCA GTCACTTATC
  AGCTTCTTAC AGTGCTGCAA ATGCCTCACT GTTGCTGTGC TCCCCTTATT CCAGATGTGT
  CCGATTACCA TCAAAACCCG TACCTTCTTG CTACACCTGA ACATGCTAAG CATGTACAGC
  CTACTCTGCT CCCGGGGACC CTGTAAACTG CCAAAGAGAA GAGCCTCAAG AAGCCTTAGT
  K
  TTAATATTAC AAAGCAGAAC TTTGGGCATA TCTCAGTGGT AGAGCCCCTG CCTAGAATCC
  CCCAATGAGG GGCTGGGGGC GTGGCTCAGT GGTAGAGCCC CTGCCTAGAA TCCCCCAGTG
  AGGGGCTGGG GCATAGGTCA GTAGTAAAGT GCTTACCTTC CAAGCACAGG CCCTGAGTTC
  CATCTGTAGC ATGACCATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51883643	NES14909130	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	G	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36500314					SNP	G	T	T	T	G	G	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883643	NES14909130	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18617226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pglyrp1	peptidoglycan recognition protein 1			Intron
				Noncoding-Transcript-Variant
Rr642924	regulatory region 642924			889 bp proximal
Tssr64752	transcription start site region 64752			1378 bp upstream