rs36499184 SNP Detail

Summary

• ID
  rs36499184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:88323457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGGCCC AGAGACCACA
  TGAAGCCCCC AGAACAGCAC TCTAGAGCTT AGGTCCCTGA AGCCTCCTCC ACTGTCCTTC
  CAGATAGTCC CTTCCTGTCT CTACTCTTTG ACAGTCATAA TCTACCAAGC AGTCTAGCTC
  CCAGCCTGCT GCTAAGGGAG CCTCACATGT CCATCAACTA CTTTAGGCAC CACTCACCTG
  Y
  GGGCTCAAGC ATTCCTGATG CTAGGCAGAG CAACAGTGCA CATATCTGAG GATCAAGACT
  AGGTACTTCC TACATGAGGG GATAAGGGAC ATTCCATCCA CTGCAGGCTC CCCAGAGTTG
  ATCATATTCA GCGGTCTACC TTTACCATAA GATGGCAGTG ACAATCTAGA GAGGGCAGCA
  CTGGCTTCAC AGAGGTACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51359573	NES13742157	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36499184					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51359573	NES13742157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88323457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eefsec	eukaryotic elongation factor, selenocysteine-tRNA-specific			Intron
				Noncoding-Transcript-Variant
Rr633876	regulatory region 633876			1040 bp proximal