rs36497213 SNP Detail

Summary

• ID
  rs36497213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68545946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGCAGT GGCCACCAGC
  CCCTGCTGTT GCTTCTTCTA AATGAATCCC ATACACTTCA CCTAGGCAGG CCGAGGACCA
  GTGCCGTCTG GACATTGTTC TTTCTCACCA GGACTGCTAT AAAACCTTCC CAAAGTGCTA
  CCCTCTATGT TAGTCACCTC TTGCCCATCC TTGACACTGT CCTTTATGGC CTTTCAAAAA
  Y
  GAAAACACGG GTGGTGGTGG CGCACACCTT TCATCCCAGC ACTCAGGAGG TAGAGGCAGA
  CAGATCTCTG AGATCATGGC CAGCCTGGTC TACAGAGTGA GCTCCAGACA GCCAGGGATA
  CACAGAGAAA TCCTGTCTCC ATTAAAATTT AAAAAAAAAA AAAGCACACA CATAAACAGA
  AAACCCACAA ATACTTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51542399	NES14684672	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36497213					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542399	NES14684672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68545946 () rs orientation: forward

Symbol	Name	Function Class
Rr578052	regulatory region 578052	660 bp distal
Rr578053	regulatory region 578053	397 bp distal