rs36495989 SNP Detail

Summary

• ID
  rs36495989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87656484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTACCA CAGCAGCACG
  GATGCTGCTC TCTGCTGAGA CTCTATCTCT GAGGAGAGCT CCAAACTAGG CTCTGGGGGA
  CACTGGGGAC ACGGTATTGC TGGTACTTTG ATTCAGCCAC TCAGCTTTTA GAGGAACATT
  TATTGAGTGA CTACCCTGTG CCAAGGAAAC CAATAGTGAG TGAGCCTAAA CACCAGAGTC
  Y
  TGCATCAGAG AGCTGGCGAT CAGCCTCTCC ACTAGGGGGA GGCAGACGCT AATCTAGCAA
  CAGGGGAAAG CACATCGGAG TGCAGCTTGA GCTGTGCATG TGACCCTGAG CCGTTAAACC
  CAGCACTCAA GAGGCAGAGG CAAGCAGAGC TCTTGAGTTC CAGGCCAGCC AGGACTACAT
  AGTGAGACAG AGTCTCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51576149	NES14670764	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36495989					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576149	NES14670764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87656484 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	552 bp upstream
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	345 bp distal
Rr579536	regulatory region 579536	within coordinates
Rr579537	regulatory region 579537	25 bp proximal
Tssr33946	transcription start site region 33946	622 bp upstream
Tssr33947	transcription start site region 33947	609 bp upstream
Tssr33948	transcription start site region 33948	579 bp upstream
Tssr33949	transcription start site region 33949	562 bp upstream
Tssr33950	transcription start site region 33950	547 bp upstream