rs36495565 SNP Detail

Summary

• ID
  rs36495565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15166873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACATAAT AAATAAATCT
  TTTTAAAAAT ACATTCTATC TTAGGAATCA CAAAGGAAAA AACTAAACAG ATTACATTAA
  AAACAAAATA AATTGGAAAT ATAATAGTGA AAAGAATTAA TACATTTATA TACTCAATAT
  TTTATGTAGC TCAATATTCT GTAAAAGAAG GAAAAAATAT AAATTATCAA TTAAAAAATG
  Y
  CCAATGAAGA AAAGTGAAGG GGAAATTTAA ATGTATTAGC AATTTTGTAC TATTTTACAT
  ATAATGTAAA TATACAATTA TTTTATTTTC AAATTTTATG TGCATATAGA CATAGCAGAT
  AAGCACTTTA TTCATAATGT AAACTATTAT CAGCTTTGAA AATCCTAAAT AGAAAAACTT
  GTATTTCTAG TTTTTCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51214154	NES13794363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36495565					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51214154	NES13794363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15166873 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626644	regulatory region 626644			226 bp distal