rs36493216 SNP Detail

Summary

• ID
  rs36493216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108204628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCATTCGG GGACTGAGAA TAGCAGCTTG AAAATAAAAC
  CTCATCAGCT GCCACTCCAC AGCATCTACT GGACTCTTCT TGCAGCTCTG GGCTACAATA
  R
  TAGTCTACTA TAGAGATTAG ATTGTCTTCG CTGTAAGTGT AGCTGGCTGG TAGGGTGCTT
  GCCAACATGC ATGGGTCACA GAGTTCTGTC CCCAGGACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss51819407	NES14773344	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	A		A		A
ss133497833	ENSMUSSNP4481901	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss321892128	CHEV_6_108177661	CHEVERUD	SCREENING_POP	f	SNP							G		A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs36493216					SNP	G	G	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51819407	NES14773344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108204628 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636058	regulatory region 636058	11 bp proximal