rs36493045 SNP Detail

Summary

• ID
  rs36493045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78877658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAACTAA AACATATTTC
  TTGTATACTT TTTGATACAA AGGCTGAAAG GCTTGGAGTT CACTTTGTCT TTCTGTTTTT
  ATTATATATG AAAATGGCAG CACATAAGTA GACTTAGAAC TACATGATAA AAGTACTCTA
  GTATGTCTGC TTAATGTTCC TGGGTATTAT CTCTGTCCAT CAATTTGTAA GGCCTCAGGT
  R
  AAAATAAATA TGCTGTAAAT TCTTCTGTAA TGGGATTCAC AAGCTTTGCT TACAGGTAGC
  AAGAGAAACA TGCCCAAATA TTTTGTACTT TTGGAACATA GGTATGACAA GAAGAAAACT
  TAGTTCAGAA TCAGTACTGA ATAGCTATGA ATAGGGTGGA GTCTTTTTTA AATGTACAGA
  TCTGACTTTT AAATTTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51711160	NES14810522	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36493045					SNP	G	G	G	G	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51711160	NES14810522	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78877658 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	441 bp distal
Rr632521	regulatory region 632521	519 bp distal